1. factR::chrom_matched_query_gtf
    Chromosome matched version of "query_gtf"
    rda| rds
    GRanges
  2. factR::domains.known
    Example output of predictDomains()
    csv| xlsx| json| ndjson| rda| rds
    data.frame|85780 x 5
  3. factR::domains.out
    Example output of predictDomains()
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14880 x 5
  4. factR::matched_query_gtf
    Seqlevels and gene_id matched query data
    rda| rds
    GRanges
  5. factR::new_query_gtf
    Query data containing CDS information
    rda| rds
    GRanges
  6. factR::query_cds
    CDS from 4 transcripts entries of the same gene
    rda| rds
    CompressedGRangesList
  7. factR::query_exons
    GRangeList of exons from 4 transcripts entries from query_gtf
    rda| rds
    CompressedGRangesList
  8. factR::query_gtf
    Imported GTF file containing 4 transcript entries of the same gene
    rda| rds
    GRanges
  9. factR::ref_cds
    CDS from 2 reference transcripts entries of the same gene
    rda| rds
    CompressedGRangesList
  10. factR::ref_exons
    Exons from 2 reference transcripts entries of the same gene
    rda| rds
    CompressedGRangesList
  11. factR::ref_gtf
    Imported GTF file containing 2 reference transcript entries of the same gene
    rda| rds
    GRanges